correct.peptide.ratios: Correct peptide ratios with protein ratios from a separate...
In fbreitwieser/isobar: Analysis and quantitation of isobarically tagged MSMS proteomics data
Description
Usage
Arguments
Author(s)
Description
Correct peptide ratios with protein ratios from a separate experiment.
Usage
1
2
3
correct.peptide.ratios(ibspectra, peptide.quant.tbl, protein.quant.tbl,
protein.group.combined, adjust.variance = TRUE,
correlation = 0, recalculate.pvalue = TRUE)
Arguments
ibspectra
IBSpectra object.
peptide.quant.tbl
Calculated with peptideRatios.
protein.quant.tbl
Calculated with proteinRatios.
protein.group.combined
ProteinGroup object generated on both PTM and protein data.
adjust.variance
Adjust variance of ratios.
correlation
Assumed correlation between peptide and protein ratios for variance adjustment.
recalculate.pvalue
Recalculate p-value after variance adjustment.
Author(s)
Florian P. Breitwieser
fbreitwieser/isobar documentation built on May 16, 2019, 12:01 p.m.
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Description Usage Arguments Author(s)
Description
Correct peptide ratios with protein ratios from a separate experiment.
Usage
1 2 3 | correct.peptide.ratios(ibspectra, peptide.quant.tbl, protein.quant.tbl,
protein.group.combined, adjust.variance = TRUE,
correlation = 0, recalculate.pvalue = TRUE)
|
Arguments
ibspectra |
IBSpectra object. |
peptide.quant.tbl |
Calculated with peptideRatios. |
protein.quant.tbl |
Calculated with proteinRatios. |
protein.group.combined |
ProteinGroup object generated on both PTM and protein data. |
adjust.variance |
Adjust variance of ratios. |
correlation |
Assumed correlation between peptide and protein ratios for variance adjustment. |
recalculate.pvalue |
Recalculate p-value after variance adjustment. |
Author(s)
Florian P. Breitwieser
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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