AddGenomeVectors: Generates phyletic vectors of each genome in a group, which...

In fcampelo/KOMODO2-CRAN: Kegg Orthology EnrichMent Online DetectiOn

Description

Generates phyletic vectors of each genome in a group, which stores the count of occurrences of a GO term in that genome.

Usage

AddGenomeVectors(defs, anno, genome.names, someGV = NULL)

Arguments

defs	an enriched KOMODO2-type list object containing at least the fields named in parameters 'anno' and 'genome.names', as well as a field named 'ontology' (containing the name of the ontology to use). Depending on the ontology other fields may be needed.
anno	name of the field in 'defs' containing a list with annotation from the original input data
genome.names	name of the field in 'defs' containing a char vector with the names of the genomes to select.
someGV	data.frame containing a previously processed set of genome vectors.

Value

list with the phyletic vector of each genome of the input group.

fcampelo/KOMODO2-CRAN documentation built on March 7, 2020, 6:35 a.m.