Description Usage Arguments Examples
View source: R/GeneratBHcode.R
Generates the stan code to be used for the models, basd on the prior information provided. This allows to only compile one model for all data, saving a lot of computing time.
1 2 3 4 5 6 7 8 9 10 11 | GenerateBHcode(
K.prior,
Ksd.prior,
r0.prior,
r0sd.prior,
d.prior,
dsd.prior,
N0.prior,
N0sd.prior,
sdev.prior
)
|
K.prior |
Prior value for the mean carrying capacity (K). Must be on log scale and numeric |
Ksd.prior |
Prior value for the standard deviation on carrying capacity (K). Must be on log scale and numeric |
r0.prior |
Prior value for the mean intrinsic rate of growth (r0). Must be on log scale and numeric |
r0sd.prior |
Prior value for the standard deviation on intrinsic rate of growth (r0). Must be on log scale and numeric |
d.prior |
Prior value for the mean death rate (d). Must be on log scale and numeric |
N0.prior |
Prior value for the mean starting population size (N0). Must be on log scale and numeric |
N0sd.prior |
Prior value for the standard deviation on starting population size (N0). Must be on log scale and numeric |
sdev.prior |
Prior value for the standard deviation for the model fitting. Must be numeric. Defaults to 1. |
dd |
Dataframe with columns for population size data (colname=popsize), time data (colname=time) and unique identifiers for each population (colname=ident) |
1 |
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