create_timedep_template: Customization code for time-dependent rates taken with minor...

In ferlicjl/estipop: ESTIpop is a simulation software tool written in C++ to simulate and estimate rate parameters for general multitype branching processes

Description

McDonald, T. O., & Michor, F. (2017). SIApopr: a computational method to simulate evolutionary branching trees for analysis of tumor clonal evolution. Bioinformatics, 33(14), 2221-2223.

Usage

create_timedep_template(exprn, params,
  cppfile = "custom_rate_plugin.cpp")

Arguments

cppfile

file name of .cpp file to create

Details

Original code author: T. O. McDonald (mcdonald(at)jimmy.harvard.edu)

create_timedep_template

Creates a time-dependent rate ".cpp" template file at the given location which can be modified before running 'compile_timedep'.

Examples

## Not run: 
create_timedep_template(cppfile = "custom_rate_plugin.cpp")

## End(Not run)

ferlicjl/estipop documentation built on March 5, 2020, 10:45 p.m.