Man pages for ferrettigs/rmedits
Scripts for generating sumary statistics, analyses, plots and report documents for The Quality Evaluation of DCF data for data limited Information in the Mediterranean Sea.
| boxplotLenDistComm | BoxPlot of Commercial Length Data |
| catchSummary | Summary table for a focal Species and GSA |
| connectMedits | Create Connection to MEDITS Database on localhost. |
| corPlot | Correlation Plot of Catch at Age |
| crossCorMatrixPlot | Cross Correlation Matrix of Catch at Age |
| formatLat | Format MEDITS Coordinates |
| freqMatSummary | Summary table for Maturity frequencies |
| freqMatSummary2 | Summary table for Maturity frequencies |
| getAnnualSamples | Get Annual Samples |
| getDiscLenData | Get and Process Fisheries Discards at Length Data |
| getFishLandData | Get and Process Fisheries Landings at Length Data |
| getFreqData | Get Maturity Specific CPUE |
| getGLMfit | Get Standardized CPUE Through GLM Fit |
| getMedits | Get MEDITS data |
| getSpecData | Get MEDITS data by Species |
| getSpecTab | Get MEDITS Reference List and correspondent commercial codes |
| getStdat | Get MEDITS Strata Features |
| getStockScore | Get Score for Stock |
| getSumStats | Get Summary Statistics for Index Time Series |
| getTA | Load TA from the Database |
| multiplotCS | Multipanel Plot for Catch Summary Page |
| multiplotCStogether | Multipanel Plot for Catch Summary Page |
| multiplotSM | Multipanel Plot for Size and Maturity Stats |
| plotAgeTrend | Plot Age Class Time Series |
| plotAgeTrendFL | Cross Correlation Matrix of Catch at Age |
| plotCatchDateDis | Plot Catch Date Distribution |
| plotCatchSummary | Plot Index of Abundance Over Time |
| plotDepthDis | Plot Depth Distribution Density |
| plotLenDis | Boxplot of Length Distribution |
| plotLenDistComm | Plot Length Distribution Commercial |
| plotMeasuredAnimals | Plot Measured Animals |
| tableCatchDateDis | Tabulate Catch Date Distribution |
| tableLenDis | Tabulate Length Distribution |
| tabMeasuredAnimals | Tabulate Measured Animals |
| writeCSpage | Write Catch Summary Page |
| writeGSApage | Write GSA summary Page |
| writeSI | Write SweaveInputs for CS Pages |
