catchSummary: Summary table for a focal Species and GSA

In ferrettigs/rmedits: Scripts for generating sumary statistics, analyses, plots and report documents for The Quality Evaluation of DCF data for data limited Information in the Mediterranean Sea.

Description

Summary table for a focal Species and GSA

Usage

catchSummary(con, code = "ELEDMOS", index = "ind_skm", stdat, gsa = "all",
  matFrac = FALSE, matStage = 3)

Arguments

con	connection to the MEDITS database.
code	species code
index	index of abundance of interest. It can be ind_skm or p_skm for biomass
stdat	data.frame with data on strata
gsa	gsa number or a vector of numbers (e.g. c(1,5,6)), or "all".
matFrac	whether to correct the index for the fraction of fish having a certain maturation stage.
matStage	MEDITS maturity code, from 0 to 4 and ND. 0 undetermined, 1 = immature, 2 maturing, 3 mature, 4 spent resting. See manual for details.
dat	specific data with catches

ferrettigs/rmedits documentation built on May 28, 2019, 7:34 p.m.