apply_lm | Model gene expression levels using the given list of... |
count_repeats | Count uniquely mapped reads to the repeat regions of interest... |
get_intervals | Retrieve the genomic locations of all genes in a given read... |
get_overlaps | Find overlapping intervals. |
rm_format | Parse a given RepeatMasker annotation file. |
summarize_repeat_counts | To summarize counts of repeats as gene name and repeat family |
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