ggheatmap: Function to run pipeline

In findlaycopley/ggheatmap: A wrapper for geom_tile and ggdendrogram that will generate a heatmap as a ggplot object

Description

Runs the entire pipeline to generate a heatmap

Usage

ggheatmap(
  matrix,
  scale = "row",
  Rowv = TRUE,
  Colv = TRUE,
  PRINT = TRUE,
  verbose = FALSE
)

Arguments

scale	(row/col/none) how should the data be scaled (default: row)
Rowv	(TRUE/FALSE) should the rows be clustered (default: TRUE)
Colv	(TRUE/FALSE) should the columns be clustered (default: TRUE)
PRINT	TRUE/FALSE should the plot be displayed (default: TRUE)
verbose	TRUE/FALSE shows extra info (default: FALSE)
heatmapClass	object of class heatmap (required)

Examples

heatmapClass <- plotHeatmap(heatmapClass, scale="row", Rowv = TRUE, Colv = TRUE)

findlaycopley/ggheatmap documentation built on Nov. 15, 2020, 7:39 p.m.