importOpenClinica: import Open Clinica data

In finite2/peter.utilities: Peter's utility functions

Description

Takes text files generated from Open Clinica and does some initial formatting saving them in an R format.

Usage

importOpenClinica(txt, path, dates = NULL)

importOpenClinica_batch(path, trialStub, dbName, newFolder, delStub = "")

Arguments

txt	Filename
path	Filepath
dates	A vector of column names to convert to dates
trialStub	A string to filter unwanted files from the target folder
dbName	The file name for the .Rdata file will all the data contained within it
delStub	A string to remove off the data.frames if the names contain lots of unwanted duplication

Details

import.openClinica creates a data.frame from a comma delimited file. Any column with the word date and any column named in the date variable in it is formatted to a POSIXct date

(path,trialStub,dbName,newFolder,delStub="")

Functions

• importOpenClinica_batch: Runs importOpenClinica on a folder and saves to an .Rdata file.

finite2/peter.utilities documentation built on May 16, 2019, 12:54 p.m.