Man pages for fishsciences/YoloBypassSBM
Yolo Bypass Salmon Benefits Model
| annual_abundance | Annual abundance of outmigrants |
| calculate_sar | Calculate SAR |
| calculate_sar_difference | Calculate SAR difference |
| draw_ocean_year_type | Draw ocean year type |
| entrainment | Fish entrainment at Fremont Weir |
| extract_results | Extract selected columns from raw model output |
| flood_duration | Flood duration |
| floodplain_temperature | Floodplain temperature |
| floodplain_temperature_difference | Floodplain temperature difference |
| freeport_flow | Freeport Flow |
| freeport_temperature | Freeport temperature |
| fremont_weir_proportion | Proportion of fish entrained onto the Yolo Bypass at Fremont... |
| growth | Growth |
| growth_parameters | Growth parameters |
| initial_cohort_abundance | Initial cohort abundance |
| initial_cohort_fork_length | Initial cohort fork length |
| inundated_sqkm | Inundated area |
| inv_logit | Inverse logit |
| knights_landing_fl_params | Knights Landing fork length parameters |
| knights_landing_timing | Knights Landing entry timing |
| length_weight | Length-weight relationshiop |
| length_weight_parameters | Length-weight parameters |
| logistic | logistic function |
| ocean_survival | Number of adults returning from ocean |
| ocean_survival_parameters | Ocean survival parameters |
| passage | Passage survival and time from Fremont Weir to Chipps Island |
| passage_survival | Passage survival from Fremont Weir to Chipps Island |
| passage_time | Passage time from Fremont Weir to Chipps |
| rearing_abundance | Rearing abundance |
| rearing_growth | Rearing growth |
| rearing_proportion_parameters | Rearing proportion parameters |
| rearing_survival | Rearing survival |
| rearing_survival_parameters | Rearing survival parameters |
| rearing_time_delta | Delta rearing time |
| rearing_time_parameters | Rearing time parameters |
| rearing_time_yolo | Yolo Bypass rearing time |
| reset_model_inputs | Reset model inputs |
| run_one_rep | Run one replicate of the model |
| run_simulation | Run simulation |
| simulation_parameters | Simulation parameters |
| summarise_quantiles | Summarise quantiles of replicates in a grouped dataframe |
| temperature_adjustment | Adjust rearing time based on temperature |
| toe_drain_temperature | Toe Drain temperature |
| water_year_type | Water year type |
| weight_length | Length-weight relationshiop |
