make_detection_table: Make Detection Data.frame

In fishsciences/elaphos: Data Package For CFS E-DNA Experiments

Make Detection Data.frame

Description

Creates a detection data.frame from CQ results, suitable for summary reports.

Usage

make_detection_table(
  df,
  threshold = 40,
  labs = c("ND", "(+)"),
  cq_col = "Cq",
  target_col = "Target",
  filter_col = "FilterID"
)

Arguments

df	data.frame of CQ results, as returned by read_qpcr
threshold	numeric, the threshold CQ, below which is considered a detection
labs	character vector of length 2 corresponding to the string to label for 0 (nondetect) and 1 (detect)
cq_col	string, the name of the CQ column
target_col	string, the name of the target column
filter_col	string, the name of the filter column

Value

data.frame of detection table

Author(s)

Matt Espe

fishsciences/elaphos documentation built on July 9, 2022, 4:37 a.m.