Man pages for fkeck/phylosignal
Exploring the Phylogenetic Signal in Continuous Traits
| barplot.phylo4d | Barplot of Traits Values along a Phylogeny |
| descentsNames | Names of descents |
| directDescents | ID of direct descents |
| distEq | Pairwise Distance from Regularly Distributed Points |
| dotplot | Dotplot |
| dotplot.phylo4d | Dotplot of Traits Values along a Phylogeny |
| evenColors | Palette of evenly distributed colors |
| focus | Focus on sub parts of a plot |
| graphClust | Phylogenetically constrained clustering |
| gridplot | Gridplot |
| gridplot.phylo4d | Gridplot of Traits Values along a Phylogeny |
| kStarTest | Computes permutation test for Blomberg's K Star |
| kTest | Computes permutation test for Blomberg's K |
| lambdaTest | Test Pagel's Lambda Optimize Pagel's Lambda and do a... |
| layouterize | Set layout for plots |
| layouterizeRatio | Set layout for plots |
| lipaMoran | Local Indicator of Phylogenetic Association |
| mantelStat | Mantel statistic |
| matchTipsAndTraits | Match matrix row/col names with phylo4d tips/traits |
| moranTest | Computes permutation test for Moran's I |
| multiplot.phylo4d | Plots of Traits Values along a Phylogeny |
| navic | Phylogeny and pollution sensitivity of diatoms |
| orderGrArg | Reordering vector or matrix of settings. |
| pagelLogLik | Computes log-likelihood for data and a given value of Pagel's... |
| phyloCorrelogram | Phylogenetic correlogram |
| phylosignal | phylosignal |
| phyloSignalBS | Computes phylogenetic signal for bootstrapped replicates of a... |
| phyloSignalINT | Computes phylogenetic signal at each internal node of a... |
| phylosignalStats | Computes phylogenetic signal with different methods |
| phyloSim | Simulate the behaviour of phylogenetic signal statistics with... |
| phyloSimSignal | Phylogenetic signal estimation as a fraction of a Brownian... |
| phyloWeights | Phylogenetic weights matrix |
| plot.graphclust | Plot phylogenetically constrained clustering |
| plot.phylocorrelogram | Plot a phylogenetic correlogram |
| plot.phylosim | Plot 'phylosim' object |
| plot.phylosimsignal | Plot signal estimation as a fraction of a Brownian Motion... |
| print.graphclust | #' Print results of phylogenetically constrained clustering |
| print.phylosimsignal | Print signal estimation as a fraction of a Brownian Motion... |
| read.p4d | Read a phylo4d object from files |
| rTraitContWeight | Traits Values Simulation |
| subsetPhyloSimSignal | phyloSimSignal subsetting |
| white2red | Color Palette |
