Man pages for flee-group/flume
A Model For Fluvial Meta-Ecosystems
| adjacency | River network adjacency matrix |
| algae | Algal metacommunity N:P dataset |
| ce_funs | Colonisation and extinction functions |
| ceprob | Colonisation and extinction probability, given the current... |
| check_par | Check parameter dimensions |
| community_scenarios | Generate scenarios for site by species matrices |
| discharge | Get and set discharge and cross-sectional area of a river... |
| dispersal | Generate scenarios for species' dispersal abilities |
| dispersal_params | Returns dispersal parameters for a metacommunity |
| dot-check_state | Check state matrix for errors |
| dot-compute_comp_matrix | Make a competition matrix |
| dot-default_river_plot_options | Set default plot options when not user-specified |
| dot-do_sim | Worker function for running simulations in parallel |
| dot-dRdt_params | Prepare parameter list for dRdt |
| dot-get_hydro_attr | Pull out discharge/cross sectional area |
| dot-output_table | Extract a variable across an entire network or series of... |
| dot-pairwise_comp | Generate a function to integrate to determine competition... |
| dot-set_mfrow | Choose some sensible number of plots for a river network |
| dot-validate_adjacency | Perform checks on a river network adjacency matrix |
| dRdt | Compute time-derivative for resources |
| flume | Create a FLUvial Meta-Ecosystem model |
| flume_networks | Flume river networks for 5 different rivers |
| flume_package | flume: A package for modelling FLUvial Meta-Ecosystems |
| geometry | Compute hydraulic geometry from discharge |
| kamp | Flume river network and associated data for the Kamp River... |
| lateral_discharge | Compute lateral discharge |
| length.river_network | Number of nodes in a river network |
| metacommunity | Create a metacommunity |
| niche | Functions for determining the niche of species |
| niches | Generate scenarios for species niches |
| nparams | Functions for accessing species niche parameters |
| plot.flume | Plot the results of a flume simulation |
| plot.metacommunity | Plot species independent stable envelopes |
| plot.river_network | Plot a river network |
| plot.species | Plot species niches |
| prevalence | Compute current prevalence for all species in a river network |
| reach_length | Length of every reach in the river network |
| river_network | Create a river network |
| r_transform | Transform resources into niche dimensions |
| ruf | Generate a resource use function |
| run_simulation | Run the simulation for a specified number of time steps |
| species | Creates species |
| state | Get/set the (resource) state of a river network |
| summarise | Methods for summarising simulation results |
| theme_flume | ggplot2 theme for flume |
