map_spectral_species: maps spectral species based on PCA file computed previously

In floriandeboissieu/biodivMapRfdb: biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

Description

maps spectral species based on PCA file computed previously

Usage

map_spectral_species(Input_Image_File, Output_Dir, PCA_Files, PCA_model,
  SpectralFilter, MaskPath, Pix_Per_Partition, nb_partitions, CR = TRUE,
  TypePCA = "SPCA", nbclusters = 50, nbCPU = 1, MaxRAM = FALSE)

Arguments

Input_Image_File	character. Path of the image to be processed
Output_Dir	character. Path for output directory
PCA_Files	character. Path of the PCA image
PCA_model	list. Parameters for teh PCA model to be applied on original image
SpectralFilter	list. information about spectral band location (central wavelength), bands to keep...
MaskPath	character. Path of the mask corresponding to the image
Pix_Per_Partition	numeric. number of pixels for each partition
nb_partitions	numeric. number of partition
CR	boolean. Set to TRUE if continuum removal should be applied
TypePCA	character. Type of PCA: choose either "PCA" or "SPCA"
nbclusters	numeric. number of clusters defined in k-Means
nbCPU	numeric. Number of CPUs to use in parallel.
MaxRAM	numeric. MaxRAM maximum size of chunk in GB to limit RAM allocation when reading image file.

Value

None

floriandeboissieu/biodivMapRfdb documentation built on Nov. 4, 2019, 12:43 p.m.