In flow-r/flowr: Streamlining Design and Deployment of Complex Workflows

module load R git
git clone git@github.com:sahilseth/flowr.git

## test for roel
cd ~/apps
rm -rf ~/apps/flowr
git clone https://github.com/sahilseth/flowr.git
R CMD INSTALL flowr
flowr run sleep execute=TRUE platform=torque

## HMS test
install.flow; flowr run sleep platform=lsf execute=TRUE

Rscript -e 'flowr:::.run_sleep(platform = "moab", execute=TRUE)'

devtools::install_github("sahilseth/flowr")
library(flowr)
setup()

setwd("~/Dropbox/public/github_flow/")
devtools::load_all(".")

library(flowr)
setup()

platform = "torque"
platform = "lsf"
platform = "moab"


fobj = flowr:::.run_sleep(platform = platform)
fobj = flowr:::.run_sleep(platform = platform, execute=TRUE)

fobj = .run_sleep() ## should be local
fobj@jobs[[1]]@platform == "local"
fobj = .run_sleep(execute = TRUE)


fobj = .run_sleep(platform = "lsf") ## should be local
fobj = .run_sleep(platform = "sge") ## should be local
fobj = .run_sleep(platform = "moab") ## should be local