overlap_significance: Determines significance of overlap using hypergeometric...

In fluentin44/epicR: A package to generate reports for BMIQ pipeline

Determines significance of overlap using hypergeometric probability test

Description

Determines significance of overlap using hypergeometric probability test

Usage

overlap_significance(
  table_a,
  table_b,
  follow_bacon = FALSE,
  top_100 = NULL,
  fdr = NULL
)

Arguments

table_a	Your first methylation results sheet.
table_b	Your second methylation results sheet with which you want to compare the first.
follow_bacon	Do you want to use the bacon p.value/FDR values? Needs TRUE or FALSE.
top_100	Do you want to use the top 100 hits ordered by significance? Either true or leave blank/dont fill.
fdr	Do you want to use an FDR cutoff INSTEAD of the top 100? Specify an FDR value.

Value

GeneOverlap result to console

Examples

overlap_significance(table_a, table b, follow_bacon=TRUE, fdr=0.05)

fluentin44/epicR documentation built on June 29, 2022, 6:39 a.m.