plotOneTree: Plot a phylo4 object

In fmichonneau/phylobase: Base Package for Phylogenetic Structures and Comparative Data

Plot a phylo4 object

Description

Plots the phylogenetic tree contained in a phylo4 or phylo4d object.

Usage

plotOneTree(
  xxyy,
  type,
  show.tip.label,
  show.node.label,
  edge.color,
  node.color,
  tip.color,
  edge.width,
  rot
)

Arguments

xxyy	A list created by the phyloXXYY function
type	A character string indicating the shape of plotted tree
show.tip.label	Logical, indicating whether tip labels should be shown
show.node.label	Logical, indicating whether node labels should be shown
edge.color	A vector of colors in the order of edges(phy)
node.color	A vector of colors indicating the colors of the node labels
tip.color	A vector of colors indicating the colors of the tip labels
edge.width	A vector in the order of edges(phy) indicating the widths of edge lines
rot	Numeric indicating the rotation of the plot in degrees

Value

Returns no values, function invoked for the plotting side effect.

Author(s)

Peter Cowan [e-mail]

See Also

treePlot, phyloXXYY

Examples

library(grid)
data(geospiza)
grid.newpage()
xxyy <- phyloXXYY(geospiza)
plotOneTree(xxyy, type = 'phylogram',
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)

grid.newpage()
pushViewport(viewport(w = 0.8, h = 0.8))
plotOneTree(xxyy, type = 'phylogram',
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)
popViewport()

fmichonneau/phylobase documentation built on Feb. 3, 2024, 2:29 a.m.