In foosa/mzir: Mach-Zehnder Interferometer Analysis Tools

knitr::opts_chunk$set(echo = TRUE)

Overview

mzir is an R package for plotting datasets from the Mach-Zehnder interferometric chemical sensor project. Datasets are structured file folders in the following format:

dataset/            # Folder name is unimportant
  meta.json         # Stores metadata (chip ID, film ID, notes, etc.)
  intervals.csv     # Stores intervals data (time vs concentration)
  data.csv          # Raw interferometer output (time vs phase shift)

Data analysis consists of the following steps:

#. Load and validate the dataset #. Adjust the intervals #. Align the intervals #. Fit the data within each interval to a model #. Sensitivity analysis #. Save processed results and plots

Usage

mzir can be run in an interactive mode where it walks the user through the data analysis process, or as a regular R library.

foosa/mzir documentation built on May 21, 2019, 1:43 p.m.