Man pages for foramashar/fashaR
R package with Foram's functions
| addtable2plot.new | Updated function to add plot to table |
| ahat.plot | Function to make the Ahat plot for genetic enrichment... |
| allelematch | Function to get logical vector for if alleles match |
| CoxResult | Function to tidy up results from CoxPH model |
| factor2num | Function to convert vector to class numeric |
| fastread | Function to read in large dataframes faster |
| forestplot.boxcol | Modified forestplot function to allow for different colored... |
| get.make.groups | Updated version of make.groups |
| getR | Function to get sum of probes A+B from Affy 6.0 array |
| grs.plot.new | Updated grs.plot function from package gtx |
| is.character0 | Function to check if object is of class character and of... |
| is.integer0 | Function to check if object is an integer of length 0 |
| makeclumps | Function to make the SNP clumps at different Pvalue cutoffs |
| makeclumps.all | Function to make the SNP clumps at different Pvalue cutoffs |
| makeclumps.CAD | Function to make the SNP clumps at different Pvalue cutoffs |
| makeclumps.custom | Function to make the SNP clumps at different Pvalue cutoffs |
| makeclumps.custom.MAF | Function to make the SNP clumps at different Pvalue cutoffs |
| makequintiles | Function to make quintiles from a column within a dataframe |
| permp | Fuction to compute Pval from given null distribution |
| read.identified | Plots grid of PCs |
| wideScreen | Function to increase width of R on linux |
