R package with Foram's functions

addtable2plot.new | Updated function to add plot to table |

aha.plot | Function to make the Ahat plot for genetic enrichment... |

ahat.plot | Function to make the Ahat plot for genetic enrichment... |

allelematch | Function to get logical vector for if alleles match |

CoxResult | Function to tidy up results from CoxPH model |

factor2num | Function to convert vector to class numeric |

fastread | Function to read in large dataframes faster |

forestplot.boxcol | Modified forestplot function to allow for different colored... |

get.make.groups | Updated version of make.groups |

getR | Function to get sum of probes A+B from Affy 6.0 array |

grs.indivbeta | Function to get adjusted betas from package gtx |

grs.plot.new | Updated grs.plot function from package gtx |

is.character0 | Function to check if object is of class character and of... |

is.integer0 | Function to check if object is an integer of length 0 |

makeclumps | Function to make the SNP clumps at different Pvalue cutoffs |

makeclumps.all | Function to make the SNP clumps at different Pvalue cutoffs |

makeclumps.CAD | Function to make the SNP clumps at different Pvalue cutoffs |

makeclumps.custom | Function to make the SNP clumps at different Pvalue cutoffs |

makeclumps.custom.MAF | Function to make the SNP clumps at different Pvalue cutoffs |

makequintiles | Function to make quintiles from a column within a dataframe |

permp | Fuction to compute Pval from given null distribution |

wideScreen | Function to increase width of R on linux |

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