full.abundmodel.llike: With the table of abundances, hyper-parameter estimates, and...

In forestgeo/ctfs: Tools for the Analysis of Forest Dynamics

Description

With the table of abundances, hyper-parameter estimates, and estimated mortality rate and population growth for each species, calculates full model likelihood.

Note use of spmean.mort.abundGibbs, not sppmean.mort.Gibbs; in the latter, the one originally used in mortality model, the likelihood of observing a mortality parameter does not depend on the population growth. Only used as a subroutine of the main modeling function, model.littleR.Gibbs.

Usage

full.abundmodel.llike(data, param, spmort, spR, type, debug = FALSE,
  badparam = NULL)

Arguments

debug	Logical. If TRUE, call browser to debug.
badparam	The name of a function (unquoted) that tests a set of model parameters for validity; must return TRUE if parameters are valid, otherwise FALSE.

forestgeo/ctfs documentation built on May 3, 2019, 6:44 p.m.