gdscANOVA_individualANOVA: Individual ANOVA test
In francescojm/FI.GDSC.ANOVA: Analysis of Variance to identify interaction between genomic features and drug response.
Description
Usage
Arguments
Value
Author(s)
See Also
Description
gdscANOVA_individualANOVA(DRUG_ID, FEATURE, display=TRUE, printTOfig=FALSE, PATH='', FN='', FDR=NA, OUTPUT_PATH='')
executes an individual ANOVA test to evaluate the statistical interaction between the IC50 values of a given drug, across cell lines, and an underlying
binary factor.
Calling this function requires the existance of the following global variables, described in https://github.com/francescojm/FI.GDSC.ANOVA/wiki and created by the functions in
FI.GDSC.ANOVA.Preamble_Library.R:
IC50s = Matrix with IC50 values
InputFeatures = List containing the input features to be correlated with drug response
GDSCANOVA_SETTINGS = List of settings variables
Usage
1
gdscANOVA_individualANOVA(DRUG_ID, FEATURE, display=TRUE, printTOfig=FALSE, PATH='', FN='', FDR=NA, OUTPUT_PATH='')
Arguments
DRUG_ID
A string containing the identifier of the drug, whose IC50s must be tested (i.e. must be a row name of the IC50s matrix)
FEATURE
display
printTOfig
PATH
FN
FDR
OUTPUT_PATH
Value
A
Author(s)
Francesco Iorio - iorio@ebi.ac.uk
See Also
A
francescojm/FI.GDSC.ANOVA documentation built on May 16, 2019, 1:54 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
gdscANOVA_individualANOVA(DRUG_ID, FEATURE, display=TRUE, printTOfig=FALSE, PATH='', FN='', FDR=NA, OUTPUT_PATH='')
executes an individual ANOVA test to evaluate the statistical interaction between the IC50 values of a given drug, across cell lines, and an underlying
binary factor.
Calling this function requires the existance of the following global variables, described in https://github.com/francescojm/FI.GDSC.ANOVA/wiki and created by the functions in
FI.GDSC.ANOVA.Preamble_Library.R:
IC50s = Matrix with IC50 values
InputFeatures = List containing the input features to be correlated with drug response
GDSCANOVA_SETTINGS = List of settings variables
Usage
1 | gdscANOVA_individualANOVA(DRUG_ID, FEATURE, display=TRUE, printTOfig=FALSE, PATH='', FN='', FDR=NA, OUTPUT_PATH='')
|
Arguments
DRUG_ID |
A string containing the identifier of the drug, whose IC50s must be tested (i.e. must be a row name of the |
FEATURE |
|
display |
|
printTOfig |
|
PATH |
|
FN |
|
FDR |
|
OUTPUT_PATH |
Value
A
Author(s)
Francesco Iorio - iorio@ebi.ac.uk
See Also
A
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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