In franciscolobo/KOMODO2: Comparative Analysis with Annotation-Based Genomic Components

Some examples of CALANGO output are available under docs/articles/results in the CALANGO Github repository. The examples below relate to the case study "Homologous regions and biological roles associated with prophage density in pathogenic and free-living Escherichia coli", which is presented as part of the manuscript CALANGO: an annotation-based, phylogeny-aware comparative genomics framework for exploring and interpreting complex genotypes and phenotypes.

Please navigate to one of the links below to check the example output:

dirs <- dir("../docs/articles/results/")
cat("\n<br/><ul><br/>")
for (i in seq_along(dirs)){
  url <- paste0("results/", dirs[i], "/index.html")
  txt <- gsub("_", "-", dirs[i], fixed = TRUE)
  cat(paste0('\n<li> <a href="', url, '" target="_blank">', txt, "</a></li><br/>"))
}
cat("</ul><br/>")

franciscolobo/KOMODO2 documentation built on Dec. 30, 2021, 1:21 a.m.