API for franciscorichter/emphasisR
Expectation Maximization on PHylogenetic Applications with Simulations and Importance Sampling
| Global functions | |
|---|---|
| AIC_llik | Source code |
| AICw | Source code |
| M_step | Source code |
| Q_approx | Source code |
| Simulation_step | Source code |
| augment_tree | Source code |
| compphyl | Source code |
| conditional_probability | Source code |
| corr_pars | Source code |
| create_grid | Source code |
| draw_extiction | Source code |
| draw_speciation | Source code |
| emphasis | Man page Source code |
| emphasis_diagnostics | Source code |
| expectedLTT | Man page |
| extinction_rate | Source code |
| fit_gam_survival | Source code |
| get.time | Source code |
| get_contributing_trees | Source code |
| get_required_sampling_size | Source code |
| ind.rpd5 | Source code |
| intensity.numerical | Source code |
| intensity.numerical2 | Source code |
| intensity.rho.numerical | Source code |
| intensity.rpd1 | Source code |
| intensity.rpd5c | Source code |
| lambda.ldpd | Source code |
| lambda.rpd1 | Source code |
| lambda.rpd5c | Source code |
| loglik.tree | Man page Source code |
| loglik.tree.numerical | Source code Source code |
| loglik.tree.rpd1 | Source code |
| loglik.tree.rpd5c | Source code |
| ltt_stat | Source code |
| mcEM | Man page Source code |
| mcE_step | Source code |
| multiplot | Source code |
| n_from_time | Source code |
| n_spec | Source code |
| n_spec_r | Source code |
| nh_extinction_rate_kendall | Source code |
| nh_extinction_rate_nee | Source code |
| nh_rate | Source code |
| nh_speciation_rate | Source code |
| nh_speciation_rate_kendall | Source code |
| nh_speciation_rate_nee | Source code |
| p | Source code |
| p_int | Source code |
| p_survival | Source code |
| phylo2tree | Source code |
| phylo2vectors | Man page |
| phylodiversity | Source code |
| sample_size_determination | Source code |
| sampling_prob | Source code |
| sim.tree_rpd1 | Source code |
| sim.tree_rpd5 | Source code |
| sim.tree_rpd5c | Source code |
| sim_brts_bootstrap | Source code |
| sim_cond_tree | Source code |
| sim_cond_tree_cr | Source code |
| simulation_analysis | Source code |
| speciation_rate | Source code |
| tree2phylo | Source code |
| vectors2phylo | Man page Source code |
