emphasis | Expectation-Maximization in Phylogenetic Analysis with... |
expectedLTT | Maximun likelihood estimation for a set of trees |
loglik.tree | log-likelihood of a phylogenetic tree |
mcEM | Monte-Carlo Expectation Maximization algorithm for... |
phylo2vectors | Convert phylo to vectors |
vectors2phylo | Convert markov chain sequences vectors onto phylo object |
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