In francocarol/shiny_ctmm: Web App For ctmm

Installation

We have a windows installer which will do everything below.

1. Install R

   Download R installer(win, mac, Linux) and install R.

   RStudio is recommended but not a must.

2. Start R

   Start R console from start menu (or RStudio if installed). All code below will run inside it.

3. Install app

   ```r install.packages("ctmmweb", repos = c("https://cloud.r-project.org/", "https://ctmm-initiative.github.io/ctmm_repo/"))

   ```

   For latest beta version:

   r if (!require("devtools")) install.packages("devtools") devtools::install_github("ctmm-initiative/ctmmweb")

4. Run app

   r ctmmweb::app()

FAQ

• If you met errors in install/upgrade lots of packages, restart R session and install again often can solve the problem.
• The app is started with default browser. Chrome is recommended as some other browsers have known limitations.

Linux

• Following instructions here for installing R (assuming Ubuntu or Linux Mint). Make sure to install r-base-dev too.
• RStudio have installer for Linux.
• Some of the packages needed for the app need extra steps to install properly:

• devtools need libcurl, ssl if it's not already installed in your system. You can watch error messages to check what is required. I installed them in Linux Mint 18 with

  sudo apt-get install libcurl4-openssl-dev
  sudo apt-get install libssl-dev
  

• ctmm need rgdal, which need another two libraries in linux:

  sudo apt-get update && sudo apt-get install libgdal-dev libproj-dev
  

francocarol/shiny_ctmm documentation built on March 17, 2020, 12:11 a.m.