| addFile | Add an input file to quantiNemo. |
| getCommand | get the command to be run |
| getParameter | Get the value of a parameter if it exist or the default value... |
| getPostInfo | Get the last part of a filename that changes through... |
| initialize-simulation-method | Build a minimal object for a QuantiNemo simulation |
| loadGeno | Load the Genotype of a QuantiNemo simulation |
| loadPheno | Load the Phenotype of a QuantiNemo simulation |
| loadStat | Load the statistic of a QuantiNemo simulation |
| loadStatPatch | Load the statistic (mean) of a QuantiNemo simulation for each... |
| loadStatRep | Load the statistic for various replicate of a QuantiNemo... |
| print.simulation | Display basic information about a quantiNemo simulation |
| run | Run a QuantiNemo simulation |
| setParameter | Add a new parameter to a quantiNemo simulation. |
| writeDataframeFiles | Print all the input files which come from a data frame |
| writeGenoFile | Print the genotype file |
| writeInput | Print all the input file for a QuantiNemo simulation |
| writeMainFile | Print the main input file for the QuantiNemo simulation |
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