Man pages for frederic-michaud/hapex
FRequency Evolution Simulator of Sex-linked Alleles
| build.all.femaleness | Give the list of femaleness in a population |
| build.all.genotype | Build all genotype for a given genome |
| build.all.maleness | Give the list of maleness in a population |
| build.all.possible.gamete | Build all possible gamete |
| build.all.recombination.modifier | build the recombination factor of all genotype |
| build.female | build the list of female in a population |
| build.genotype.from.locus | For a locus, give all possible genotype |
| build.male | build the list of male in a population |
| compute.frequency.evolution | Compute the evolution of the frequency of various genotype |
| compute.frequency.evolution.until.convergence | Compute the evolution of the frequency of the genotypes until... |
| genome-class | Create a genome |
| genotype.is.in.locus | check if a certain genotype configuration is in a locus |
| get.allele.frequency | Return the allele frequency for a given locus |
| get.all.femaleness | Give the list of femaleness in a population |
| get.all.maleness | Give the list of maleness in a population |
| get.all.recombination.modifier | get the recombination factor of all genotype |
| get.female | give the list of female in a population |
| get.femaleness | Determine the femaleness of a genotype |
| get.fitness.from.genotype.female | get fitness of a female |
| get.fitness.from.genotype.male | get fitness of a male |
| get.frequency.from.gamete.frequency | This functions allows to generate genotypic frequency by... |
| get.frequency.from.one.allele.frequency | This functions allows to generate genotypic frequency by... |
| get.gamete.female | Determine the list of gamete present in female |
| get.gamete.frequency | Return the gamete frequency in a population |
| get.gamete.from.allele | get gamete index from the alleles present on an gamete |
| get.gamete.from.index | get an gamete from it's index |
| get.gamete.male | Determine the list of gamete present in male |
| get.gamete.names | get the name of all gamete present in the population |
| get.gamete.names.from.allele.names | return names for the gamete if a name is present on a locus |
| get.gamete.names.from.allele.number | return names for the gamete if no name is provided |
| get.genotype.index.from.gametes.index | get genotype from two gamete |
| get.genotype.names | get the name of all genotype present in the population |
| get.genotype.with.given.gamete | get all the genotype which contains a given gamete |
| get.id.sd.locus | give the position of the sd locus |
| get.male | give the list of male in a population |
| get.maleness | Determine the maleness of a genotype |
| get.marginal.allele.fitness | get the marginal fitness of all allele from one locus |
| get.marginal.gamete.fitness | get the marginal fitness of all gamete in the population |
| get.nb.alleles.per.locus | get the number of allele on each locus |
| get.nb.gamete | get the number of possible gamete that exist for a given... |
| get.nb.genotype | get the number of possible genotype that exist for a given... |
| get.nb.locus | get the number of locus that contain the genome |
| get.recombination.modifier.from.genotype | get the recombination modifier of a single genotype |
| hello | Hello, World! |
| is.female | Determine if a genotype is female |
| is.male | Determine if a genotype is male |
| locus-class | Create a locus |
| mod | give the modulus of a number |
| plot.allele.frequency | Plot the evolution of the frequency of an allele |
| plot.allele.marginal.fitness | Plot the marginal fitness of all allele from one locus |
| plot.gamete.frequency | Plot the evolution of the frequency of gametes |
| plot.gamete.marginal.fitness | Plot the marginal fitness of all gamete in the population |
| plot.genotype.frequency | Plot the evolution of the frequency of genotype |
| simulate.frequency | Get the frequency of new born as a function of adults |
| where.is.locus | gives the position of a certain configuration |
