format_indels: Format indels
In fridoling/isomutR: isomutR
Description
Usage
Arguments
Value
Description
Converts the sequence information about indels to a format that can be used
to predict the coding consequences.
Usage
1
2
3
4
5
format_indels(
isomut,
ref = system.file("extdata", "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa",
package = "isomutR")
)
Arguments
isomut
a data.frame or data.table of isomut data as generated by
read_isomut.
ref
either the name of a fasta file containing the reference genome or
an object of class FaFile.
Value
A data.frame with formatted sequence information.
fridoling/isomutR documentation built on Jan. 21, 2022, 4:45 a.m.
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Description Usage Arguments Value
Description
Converts the sequence information about indels to a format that can be used to predict the coding consequences.
Usage
1 2 3 4 5 | format_indels(
isomut,
ref = system.file("extdata", "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa",
package = "isomutR")
)
|
Arguments
isomut |
a |
ref |
either the name of a fasta file containing the reference genome or
an object of class |
Value
A data.frame with formatted sequence information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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