plot_graph_CI: Plots a line with the confidence intervals as arrows

In fsfrazao/SharedS: Assessing the influence of occasional species on shared-species metrics

Description

This function plots a line and the lower and upper limits of the conficende interval for each point. It can be used to plot the curves generated by 'conservation_value_seq_CI'.

Usage

plot_graph_CI(x)

Arguments

x	A matrix with 3 columns. Each row represents one point. The 1st columns contains the point value, while the 2nd and 3rd contain the lower and upper limits of the confidence interval, respectively.

Examples

data(community_data)

#Select all samples in Evironment 'A'
comm.A<-community_data[which(community_data$environment == "A"),]

# Select only the abundance matrix (columns 1 and 2 contain the 'environment' and 'sample' data)
comm.A <- comm.A[, 3:ncol(comm.A)]

#Select all samples in Evironment 'B'
comm.B<-community_data[which(community_data$environment == "B"),]

# Select only the abundance matrix (columns 1 and 2 contain the 'environment' and 'sample' data)
comm.B <- comm.B[, 3:ncol(comm.B)]

Create 30 bootstrapped communities for each of the two original communities (comm.A and comm.B)
x_boot<-bootstrap(comm.A, 30)
y_boot<-bootstrap(comm.B, 30)

# Sequentially remove abundance classes from both communities and calculate the m3 conservation metric with 95% confidence intervals

#Plot the m3 metric with confidence intervals
plot_graph_CI(m3)

fsfrazao/SharedS documentation built on July 1, 2019, 6:24 p.m.