edit_prop_plot: Plots distributions of mismatch fractions

Description Usage Arguments Value

Description

Mismatch fractions are defined as the proportion of reads that map to a locus that support a mismatch out of all the reads that map to that locus

Usage

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edit_prop_plot(this, field = "AllSites", use.nonAtoG = TRUE,
  text_size = 20, line_size = 2)

Arguments

this

an edit_table object

field

character specifiying edit_table field. Options are "AllSites" to consider all mismatches, "Repsites" to consider only mismatches within repetitive regions, and "mirnaTargetSites" to consider only mismatches in putative 3'UTR mirna Target sites

use.nonAtoG

logical. Do you want to group all non AtoG mismatches together?

line_size

numeric specifying size of lines in plot

Value

a ggplot functional


funkhou9/editTools documentation built on May 16, 2019, 4:05 p.m.