preprocess_methylation_data: Preprocess Methylation Data
In fynnwi/intratumormeth: Intratumor DNA Methylation Analysis
View source: R/preprocessing.R
preprocess_methylation_data R Documentation
Preprocess Methylation Data
Description
Under the hood this function mainly calls methods from the minfi package. It
applies different preprocessing methods and saves the resulting methylation
data to the disk under the specified directory.
Usage
preprocess_methylation_data(samplesheet, outputDir, minfiForce = FALSE)
Arguments
samplesheet
Dataframe containing columns 'sample_id' and 'Basename'.
outputDir
Directory to save results to.
minfiForce
Argument 'force' passed to minfi::read.metharray() call
fynnwi/intratumormeth documentation built on March 29, 2022, 12:06 a.m.
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View source: R/preprocessing.R
| preprocess_methylation_data | R Documentation |
Preprocess Methylation Data
Description
Under the hood this function mainly calls methods from the minfi package. It applies different preprocessing methods and saves the resulting methylation data to the disk under the specified directory.
Usage
preprocess_methylation_data(samplesheet, outputDir, minfiForce = FALSE)
Arguments
samplesheet |
Dataframe containing columns 'sample_id' and 'Basename'. |
outputDir |
Directory to save results to. |
minfiForce |
Argument 'force' passed to minfi::read.metharray() call |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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