In gabrielburcea/cvindia: Analysis of symptoms

Pakistan analysis

pakistan_data <- read_csv("/Users/gabrielburcea/rprojects/data/your.md/pakistan_data_22092020.csv")

Symptoms across age band (20-39; 40-59, 60+)

sympt_pos_age_band <- cvindia::sympt_positive_age_band(data = pakistan_data, start_date= as.Date("2020-04-09"), end_date = as.Date("2020-09-01"), plot_chart = TRUE)


sympt_pos_age_band 

Symptoms across age band (20-39; 40-59, 60+)

sympt_pos_age_band <- cvindia::sympt_positive_age_band(data = pakistan_data, start_date= as.Date("2020-04-09"), end_date = as.Date("2020-09-01"), 
                                                       plot_chart = FALSE )


sympt_pos_age_band <- sympt_pos_age_band %>%
  arrange(desc(percentage)) %>% top_n(5)

knitr::kable(sympt_pos_age_band)

Comorbidities across age band (20-39; 40-59, 60+)

comorb_age_band_plot <- cvindia::comorbidities_age_band(data, start_date = as.Date("2020-04-19"), end_date = as.Date("2020-09-01"), plot_chart = TRUE)

comorb_age_band_plot

Comorbidities across age band (20-39; 40-59, 60+)

comorb_age_band_numbers <-  cvindia::comorbidities_age_band(pakistan_data, start_date = as.Date("2020-04-19"), end_date = as.Date("2020-09-01"), plot_chart = FALSE)

comorb_age_band_numbers

comorb_age_band_numbers <- comorb_age_band_numbers %>%
  arrange(desc(percentage)) %>% top_n(5)


knitr::kable(comorb_age_band_numbers)

Gender and age band 20-39

age_band_gender_plot <-cvindia::gender_age_band(data = pakistan_data, age_category = "20-39", plot_chart = TRUE)

age_band_gender_plot

Gender and age band 20-39

age_band_gender_numbers <- cvindia::gender_age_band(data = pakistan_data, age_category = "20-39", plot_chart = FALSE)

knitr::kable(age_band_gender_numbers)

Gender and age band 40-59

age_band_gender_plot <-cvindia::gender_age_band(data = pakistan_data, age_category = "40-59", plot_chart = TRUE)

age_band_gender_plot

Gender and age band 40-59

age_band_gender_numbers <- cvindia::gender_age_band(data = pakistan_data, age_category = "40-59", plot_chart = FALSE)

knitr::kable(age_band_gender_numbers)

Gender and age band 60+

age_band_gender_plot <-cvindia::gender_age_band(data = pakistan_data, age_category = "60+", plot_chart = TRUE)

age_band_gender_plot

Gender and age band 60+

age_band_gender_numbers <- cvindia::gender_age_band(data = pakistan_data, age_category = "60+", plot_chart = FALSE)

knitr::kable(age_band_gender_numbers)

Covid status across symptoms

covid_status_symptoms_plo <- cvindia::covid_status_symptoms(data = pakistan_data, start_date= as.Date("2020-04-09"), end_date = as.Date("2020-09-01"), plot_chart = TRUE)
covid_status_symptoms_plo

covid_status_symptoms_numbers <- cvindia::covid_status_symptoms(data = pakistan_data, start_date= as.Date("2020-04-09"), end_date = as.Date("2020-09-01"), plot_chart = FALSE)


covid_status_symptoms_n <- covid_status_symptoms_numbers %>%
  arrange(desc(percentage)) %>% top_n(5)


knitr::kable(covid_status_symptoms_n)

covid_status_comorbidities_plot <- cvindia::comorbidities_covid_status(data = pakistan_data, start_date= as.Date("2020-04-09"), end_date = as.Date("2020-09-01"), plot_chart = TRUE)


covid_status_comorbidities_plot

covid_status_comorbidities_numbers <- cvindia::comorbidities_covid_status(data = pakistan_data, start_date= as.Date("2020-04-09"), end_date = as.Date("2020-09-01"), plot_chart = FALSE)


covid_st_no <- covid_status_comorbidities_numbers %>%
  arrange(desc(percentage)) %>% top_n(5)

knitr::kable(covid_st_no)

Covid status and gender

gender_positive_plot <- cvindia::gender_covid_status(data, covid_status = "positive", plot_chart = TRUE)

gender_positive_plot

gender_positive_numbers <- cvindia::gender_covid_status(pakistan_data, covid_status = "positive", plot_chart = FALSE)

knitr::kable(gender_positive_numbers)

gender_showsympt_plot <- cvindia::gender_covid_status(data, covid_status = "showing symptoms", plot_chart = TRUE)

gender_showsympt_plot

gender_showsympt_numbers <- cvindia::gender_covid_status(pakistan_data, covid_status = "showing symptoms", plot_chart = FALSE)

knitr::kable(gender_showsympt_numbers)

gender_negative_plot <- cvindia::gender_covid_status(data, covid_status = "negative", plot_chart = TRUE)

gender_negative_plot

gender_negative_numbers <- cvindia::gender_covid_status(pakistan_data, covid_status = "negative", plot_chart = FALSE)

knitr::kable(gender_negative_numbers)

gabrielburcea/cvindia documentation built on Feb. 17, 2021, 3:31 a.m.