ovProteome_df: Ovarian Cancer Proteomics Data
In gabrielodom/Bioc2019pathwayPCA: A workshop on the pathwayPCA package
Description
Usage
Format
Source
Description
Clinical Proteomic Tumor Analysis Consortium's log-ratio
normalized protein abundance expression, as processed by the Pacific
Northwest National Laboratory. We removed one subject due to missing
survival outcome. We removed 1712 protein features because they had greater
than 20
expression data were imputed using the Bioconductor package 'impute' under
default settings.
Usage
1
Format
A data frame containing 4763 protein expression values for 83 samples.
The first column is the TCGA sample ID (Sample).
Source
Proteome (PNNL, Gene level)
http://linkedomics.org/data_download/TCGA-OV/
Cleaning script: inst/scripts/clean_multi_omics.R
gabrielodom/Bioc2019pathwayPCA documentation built on June 19, 2019, 7:40 p.m.
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Description Usage Format Source
Description
Clinical Proteomic Tumor Analysis Consortium's log-ratio normalized protein abundance expression, as processed by the Pacific Northwest National Laboratory. We removed one subject due to missing survival outcome. We removed 1712 protein features because they had greater than 20 expression data were imputed using the Bioconductor package 'impute' under default settings.
Usage
1 |
Format
A data frame containing 4763 protein expression values for 83 samples.
The first column is the TCGA sample ID (Sample).
Source
Proteome (PNNL, Gene level) http://linkedomics.org/data_download/TCGA-OV/
Cleaning script: inst/scripts/clean_multi_omics.R
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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