Man pages for gadget-framework/gadgetutils
Tools to create and maintain gadget3 models
| add_g3_attributes | Add gadget3 attributes to an existing data frame |
| bind_fit_components | Combine individual elements from multiple gadget.fit objects |
| check_params_out | Internal function to check whether g3_optim has succeeded or... |
| estimate_weights | Shortcut weights |
| estimate_weights_adist | Residual variance for abundance distributions |
| estimate_weights_cdist | Residual variance for catch distributions |
| eval_bounded | Convert normalised bounded form back to value |
| extract_year_step | Extracts year and step columns |
| g3_add_parscale | Added parscale to a parameter template. No longer needed. |
| g3_data | Aggregate count data from a data frame to gadget3 |
| g3_fit | Build output summary suitable for feeding into gadgetplots |
| g3_init_guess | Set initial guesses for parameter values in g3_cpp parameter... |
| g3_iterative | Iterative re-weighting |
| g3_iterative_setup | Initial parameters for iterative re-weighting |
| g3_jitter | Jitter analysis |
| g3_leaveout | Leave-one-out analysis. |
| g3_lik_out | Likelihood summary for a model run |
| g3_optim | Wrapper for stats::optim that returns the g3_cpp parameter... |
| g3_retro | Analytical retrospective |
| g3_stock_name | Extract parts from stock name |
| g3_update_weights | Updates weights for second stage of iterative re-weighting |
| init_abund | Generate parameterised g3a_initial_abund |
| init_sd | Generate parameterised initial conditions |
| jitter_params | Creates a jittered g3_tmb parameter template |
| model_actions | Generate a standard set of model actions |
| mohnrho | Generate parameterised g3a_initial_abund |
| pipe | Pipe operator |
| read.g3.param | Reads a file from write.g3.file to an object. Now... |
| run_g3_optim | Wrapper for g3_optim. This is an internal function used by... |
| stock_renewal | Generate paramerterised stock renewal factor |
| stock_species | Extract species name from stock |
| tabulate_SS | Calculates likelihood component scores, including scores... |
| value_from_bounds | Convert value into it's normalised form for use with... |
| write.g3.file | Writes an object to a file, typically just used within... |
| write.g3.param | A wrapper for write.g3.file that formats a gadget3 TMB... |
