init_abund: Generate parameterised g3a_initial_abund
In gadget-framework/gadgetutils: Tools to create and maintain gadget3 models

init_abund

R Documentation

Generate parameterised g3a_initial_abund

Description

Generate parameterised g3a_initial_abund

Usage

init_abund(
  imm,
  mat,
  comp_id = "species",
  mature = TRUE,
  init_mode = 1,
  exp_init = FALSE,
  exp_init_scalar = FALSE,
  exp_init_f = FALSE,
  naturalmortality = gadget3::g3_parameterized("M", by_stock = TRUE)
)

Arguments

`imm`	A g3 stock object for immature specimens
`mat`	A g3 stock object for mature specimens
`comp_id`	Part of stock name to use for parameters, e.g. 'species' will share parameters with both mature/immature
`mature`	Generate actions for mature (TRUE) or immature (FALSE) stock
`init_mode`	One of: 0 (A single scalar that decays with mortality), 1 (Initial parameter per age group (across stocks)), 2 (Initial parameter per age group per stock), 3 (Initialised at equilibrium, special case for cetaceans, see https://gadget-framework.github.io/gadget-course/marine-mammals.html)
`exp_init`	Logical, whether the initial age-specific parameters should be exponentiated
`exp_init_scalar`	Logical, whether the initial scalar should be exponentiated
`exp_init_f`	Logical, whether the parameter 'init.f' should be exponentiated
`naturalmortality`	A g3 parameter for natural mortality