FunEnrich: GO and Pathway enrichment analyses for genes of interest

Description Usage Arguments Value Author(s) Examples

View source: R/func_enrich.R

Given the output of fun_enrich, generates a bar plot of the -log10 of the p-values for one or all analysed aspects.

1 2	plot_fun_enrich(enr, aspect = "ALL", benjamini = FALSE, top = 5, char_per_line = 80)

`enr`	listr; The list of data frames resulting from `fun_enrich`.
`aspect`	character; One of ALL, BP, CC, MF or REACTOME.
`benjamini`	logical; If TRUE, plot corrected p-values.
`top`	integer; The number of top enriched terms to consider.
`char_per_line`	integer; Controls the number of characters per line for the term names in the plots.

A ggplot object.

Gregorio Alanis-Lobato galanisl@uni-mainz.de

# Use the included lists of disease genes and genes associated with metabolic
# disorders as background and genes of interest, respectively
analysis <- fun_enrich(gene.list = metabolic, background = disease.genes, 
                      id.type = "ENTREZID", benjamini = TRUE)
# Plot the 
vis <- plot_fun_enrich(enr = analysis, aspect = "ALL", benjamini = TRUE, 
                       top = 5, char_per_line = 80)