computeES.lists: computeES.lists

In galder-max/GSEAlite: GSEA lite performs simple GSEA analysis with few useful functions

Description

computes enrichment score for geneset list

Usage

computeES.lists(m,o,lG,metric)

Arguments

m	matrix of expressions. columns represent samples, rows are genes.
lG	list of gene sets. genes must be in rownames(m).
o	2-class factor where length(o) equals ncol(m). If left to NULL, m is considered as a paired difference between two classes.
metric	one of SNR or FC to respectively use snr.SNR or snr.FC function as metric in the GSEA analysis

Value

returns a list with length(lG) elements, each of which is a list of two elements returned by the lleading.edge function

Author(s)

[e-mail]

See Also

GSEA.plot

Examples

##used internally

galder-max/GSEAlite documentation built on Jan. 30, 2021, 10:50 p.m.