cycVignettesAMP: cycVignettesAMP

In gangwug/MetaCycle: Evaluate Periodicity in Large Scale Data

cycVignettesAMP

Description

This data set lists meta2d's analysis results of three circadian transcripts selected from the same source dataset used by cycMouseLiverRNA.

Usage

cycVignettesAMP

Format

A dataframe containing 71 columns described as below:

[,1]	CycID	character	transcript name
[,2]	ARS_pvalue	numeric	pvalue from ARS
[,3]	ARS_BH.Q	numeric	FDR from ARS
[,4]	ARS_period	numeric	period from ARS
[,5]	ARS_adjphase	numeric	adjusted phase from ARS
[,6]	ARS_amplitude	numeric	amplitude from ARS
[,7]	JTK_pvalue	numeric	pvalue from JTK
[,8]	JTK_BH.Q	numeric	FDR from JTK
[,9]	JTK_period	numeric	period from JTK
[,10]	JTK_adjphase	numeric	adjusted phase from JTK
[,11]	JTK_amplitude	numeric	amplitude from JTK
[,12]	LS_pvalue	numeric	pvalue from LS
[,13]	LS_BH.Q	numeric	FDR from JTK
[,14]	LS_period	numeric	period from LS
[,15]	LS_adjphase	numeric	adjusted phase from LS
[,16]	LS_amplitude	numeric	amplitude from LS
[,17]	meta2d_pvalue	numeric	integrated pvalue
[,18]	meta2d_BH.Q	numeric	FDR based on integrated pvalue
[,19]	meta2d_period	numeric	averaged period of three methods
[,20]	meta2d_phase	numeric	integrated phase
[,21]	meta2d_Base	numeric	baseline value given by meta2d
[,22]	meta2d_AMP	numeric	amplitude given by meta2d
[,23]	meta2d_rAMP	numeric	relative amplitude
[,24:71]	CT18 to CT65	numeric	sampling time point

Source

Hughes M. E., et al. (2009). Harmonics of circadian gene transcription in mammals. PLoS Genet, 5(4), e1000442.

gangwug/MetaCycle documentation built on Sept. 27, 2022, 5:43 a.m.