README.md

In gastonstat/AssotesteR: Statistical Tests for Genetic Association Studies

R package "AssotesteR"

This package is dedicated to statistical tests used in genetic association studies. It provides a toolbox with the state-of-the-art methods that have been developed to target the problem of testing for association between a binary phenotype and multiple genetic variants within a gene or a region.

Installation options

• AssotesteR (stable version from CRAN)

install.packages("AssotesteR")

• AssotesteR (latest version from github)

install.packages("devtools")

library(devtools)

install_github('AssotesteR', username='gastonstat')

Example Usage

> library(AssotesteR)

> cases = 500
> controls = 500
> total = cases + controls
> phenotype = c(rep(1, cases), rep(0, controls))

> set.seed(123)
> genotype = matrix(rbinom(total*10, 2, 0.05), nrow=total, ncol=10)

> mywss = WSS(phenotype, genotype, perm=500)

Or check out www.gastonsanchez.com/assotester for more information.

Links

AssotesteR package github

The R Project

gaston sanchez

Author Contact

Gaston Sanchez (gaston.stat at gmail.com)

gastonstat/AssotesteR documentation built on May 16, 2019, 5:43 p.m.