Man pages for gauravsk/ranacapa
Utility Functions and 'shiny' App for Simple Environmental DNA Visualizations and Analyses
| convert_anacapa_to_phyloseq | Takes an site-abundance table from Anacapa, along with a... |
| convert_biom_to_taxon_table | Takes a biom table imported in using phyloseq::import_biom()... |
| custom_rarefaction | Rarefy a phyloseq object to a custom sample depth and with... |
| ggrare | Make a rarefaction curve using ggplot2 |
| group_anacapa_by_taxonomy | Takes a site-abundance table from Anacapa, and summarizes to... |
| pairwise_adonis | Pairwise multilevel comparison using adonis |
| pipe | Pipe operator |
| runRanacapaApp | Run the shiny app! |
| scrub_seqNum_column | Remove "xxx_seq_number" column from ana_taxon_table file if... |
| scrub_taxon_paths | Replace empty calls in Anacapa taxonomy tables with Unknown... |
| theme_ranacapa | Default theme for plots |
| validate_input_files | Verify that the input taxon_table file and the input mapping... |
| vegan_otu | Takes a phyloseq object with an otu_table object and returns... |
