vegan_otu: Takes a phyloseq object with an otu_table object and returns...
In gauravsk/ranacapa: Utility Functions and 'shiny' App for Simple Environmental DNA Visualizations and Analyses
Description
Usage
Arguments
Value
Examples
Description
Takes a phyloseq object with an otu_table object and returns a vegan style community matrix.
Usage
1
vegan_otu(physeq_object)
Arguments
physeq_object
phyloseq object with an otu_table object within
Value
vegan-style community matrix
Examples
1
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good_taxon_table <- data.frame(sum.taxonomy = c("a;b;c;d;f;u", "p;q;r;s;t;u"),
site_1 = c(0,1), site_2 = c(10, 20))
good_maps <- data.frame(site = c("site_1", "site_2"), season = c("wet", "dry"),
host = c("oak", "sage"))
physeq_object <- convert_anacapa_to_phyloseq(good_taxon_table, good_maps)
vegan_otu(physeq_object)
gauravsk/ranacapa documentation built on June 7, 2019, 4:03 a.m.
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Description Usage Arguments Value Examples
Description
Takes a phyloseq object with an otu_table object and returns a vegan style community matrix.
Usage
1 | vegan_otu(physeq_object)
|
Arguments
physeq_object |
phyloseq object with an otu_table object within |
Value
vegan-style community matrix
Examples
1 2 3 4 5 6 | good_taxon_table <- data.frame(sum.taxonomy = c("a;b;c;d;f;u", "p;q;r;s;t;u"),
site_1 = c(0,1), site_2 = c(10, 20))
good_maps <- data.frame(site = c("site_1", "site_2"), season = c("wet", "dry"),
host = c("oak", "sage"))
physeq_object <- convert_anacapa_to_phyloseq(good_taxon_table, good_maps)
vegan_otu(physeq_object)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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