n2: Calculate Hill's N2 diversity measure

In gavinsimpson/analogue: Analogue and Weighted Averaging Methods for Palaeoecology

Description

Hills N2 is a measure of species diversity, commonly referred to as "effective" diversity. If computed on the rows (samples) then the "effective" number of species in each row is returned, whereas, if computed on the columns (species) then the "effective" number of occurences of each species in the data set is returned.

Usage

n2(x, ...)

## Default S3 method:
n2(x, which = c("species", "sites"), ...)

Arguments

x	matrix or data frame of species data
which	character; compute N2 on the rows ("sites") or the columns ("species") of x
...	arguments passed to other methods

Value

A numeric vector of N2 values.

Author(s)

Gavin L. Simpson

Examples

data(swapdiat)
sppN2 <- n2(swapdiat, "species")
head(sppN2)
sampN2 <- n2(swapdiat, "sites")
head(sampN2)

gavinsimpson/analogue documentation built on June 17, 2021, 2:37 a.m.