This is a minor maintenance release addressing two issues:
testthat::library_if_available()
, which is now defunct and removed from testthat, andBoth issues are rectified in the 0.8-4 release.
R CMD check
informationR CMD check
produces only the following point of interest if tested against the current CRAN version of vegan. I have included in permute 0.8-4 reference materials for tests against the 2.3-0 version of vegan that Jari Oksanen, maintainer of that package, intends to release to CRAN this week.
* checking differences from ‘permute-Ex.Rout’ to ‘permute-Ex.Rout.save’ ... OK
235c235
< This is vegan 2.2-1
---
> This is vegan 2.3-0
The output from tools::check_packages_in_dir
for checks of reverse dependencies is reproduced below
> summary(out)
Check results for packages in dir '/home/gavin/work/git/permute':
Check status summary:
NOTE OK
Source packages 0 1
Reverse depends 5 7
Check results summary:
permute ... OK
rdepends_bipartite ... NOTE
* checking DESCRIPTION meta-information ... NOTE
rdepends_cwm ... OK
rdepends_expands ... OK
rdepends_indicspecies ... OK
rdepends_NPC ... OK
rdepends_pRF ... OK
rdepends_RAM ... NOTE
* checking dependencies in R code ... NOTE
rdepends_randomizationInference ... OK
rdepends_rich ... NOTE
* checking dependencies in R code ... NOTE
* checking R code for possible problems ... NOTE
rdepends_Storm ... NOTE
* checking DESCRIPTION meta-information ... NOTE
rdepends_VdgRsm ... OK
rdepends_vegan ... NOTE
* checking Rd cross-references ... NOTE
bipartite:
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
Not an issue related to permute
RAM:
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
‘Heatplus’ ‘gtable’ ‘indicspecies’ ‘mapproj’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Not an issue related to permute
rich:
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘boot’ ‘permute’ ‘vegan’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking R code for possible problems ... NOTE
File ‘rich/R/zzz.R’:
.onLoad calls:
packageStartupMessage("This is rich ", utils::packageDescription("rich", field = "Version"), appendLF = TRUE)
See section ‘Good practice’ in '?.onAttach'.
c2cv : SRobs: no visible global function definition for ‘specpool’
rarc : sSRobs: no visible global function definition for ‘specpool’
rarc: no visible global function definition for ‘boot’
raref : sSRobs: no visible global function definition for ‘specpool’
raref: no visible global function definition for ‘boot’
raref2 : thinning: no visible global function definition for ‘specpool’
raref2: no visible global function definition for ‘boot’
rich : SRobs: no visible global function definition for ‘specpool’
rich : bspfm: no visible global function definition for ‘boot’
rich : bspfm: no visible global function definition for ‘boot.ci’
rich : bspf: no visible global function definition for ‘boot’
rich : bspf: no visible global function definition for ‘boot.ci’
Not issues related to permute
Storm:
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
Not an issue related to permute
vegan:
* checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘cclust’, ‘smacof’, ‘picante’
Not an issue related to permute
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