| ave.filter | Filters out null points in the matrix. Applies an average... |
| ave.mean.median | This function plots pileups of each selected chromosome |
| chip.selector | Load a Matrix |
| color.bar | Plots a color bar |
| combine.list | Flattens list elements |
| data.combine | Load a Matrix |
| facs_density_plot3 | facs density plot |
| filename.shortcut | Load a Matrix |
| HiC.Plot | This function plots a HiC plot. The function uses global... |
| HiCRatio.Plot | This function plots a Ratio HiC plot. The function uses... |
| inverse.matrix | Load a Matrix |
| main.subsetter | Load a Matrix |
| matrixE.old | Load a Matrix Expands and aligns the matrices This function... |
| matrixMultiE | Input a sparseMatrix dataframe. Outputs a list of 3. 1.... |
| matrixMultiEt | Load a Matrix |
| matrix.sparse | Converts a dataframe to a sparsematrix. required for ploting... |
| ratio.color.bar | Plots a ratio color bar Example using pileup.r |
| ratioF | Finds the ratio between two inputted matrices |
| read.iced | Load a Matrix |
| table.create | Load a Matrix tests |
| testf | Load a Matrix |
| workspace.folder.old | Load a Matrix |
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