make.all.bedassle.plots: Make output plots

Description Usage Arguments Details Value

View source: R/plot.output.R

Description

make.all.bedassle.plots makes figures from the output from a BEDASSLE analysis.

Usage

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make.all.bedassle.plots(
  results.files,
  data.block.file,
  prefix,
  chain.cols = NULL
)

Arguments

results.files

A vector of the filenames (in quotes, with the full file path) of the posterior results files output by the different chains of a BEDASSLE run. Can also be a single filename if user wants to visualize only a single run.

data.block.file

The filename (in quotes, with the full file path) of the data.block R object (.Robj) file output by a BEDASSLE run.

prefix

A character vector to be prepended to all figures.

chain.cols

A vector of colors to be used in plotting results from different MCMC chains. There should be one color specified for each chain. If NULL, the plots will use the required set or subset of 12 pre-specified colors. If there are more than 12 chains, users must supply their own colors.

Details

This function takes the file output from a BEDASSLE analysis and generates a number of plots for visualizing results and diagnosing MCMC performance.

This function produces a variety of plots that can be useful for visualizing results or diagnosing MCMC performance. The plots made are by no means exhaustive, and users are encouraged to make further plots, or customize these plots as they see fit. The plots generated (as .pdf files) are:

Value

This function has only invisible return values.


gbradburd/bedassle documentation built on Feb. 11, 2020, 11:48 p.m.