Man pages for gbradburd/popgenstuff
Handy Functions for PopGen Analysis in R
| calcHet | Calculate individual heterozygosity |
| calcPWP | Calculate pairwise pi between two diploid individuals |
| calcThetaW | Calculate Wu and Watterson's Theta |
| colFunc | Function for making standardized color range |
| doAllTheThings | Calculate a bunch of popgen stats from a VCF file |
| doPCA | Run a principal components analysis |
| freqs2pairwisePi | Calculate pairwise pi between all pairs of individuals in a... |
| getBPstats | Generate genotyped base-pair statistics |
| vcf2R | Load a VCF file into R |
