vcf2R: Load a VCF file into R
In gbradburd/popgenstuff: Handy Functions for PopGen Analysis in R
Description
Usage
Arguments
Value
Description
Load a VCF file into R
Usage
1
Arguments
vcfFile
The filename (with necessary path) of the
VCF file you want to read into R.
readDepth
A Boolean argument indicating whether or not
to calculate the mean read depth for each individual
from the specified VCF file. Default is FALSE.
VCF file you want to read into R.
outPath
The file path prepended to all output objects.
Value
A genotype matrix of 0s, 1s, and 2s denoting
the number of the counted allele in each individual
at each locus. Missing data are indicated with NA.
gbradburd/popgenstuff documentation built on Oct. 16, 2021, 12:05 a.m.
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Description Usage Arguments Value
Description
Load a VCF file into R
Usage
1 |
Arguments
vcfFile |
The filename (with necessary path) of the VCF file you want to read into R. |
readDepth |
A Boolean argument indicating whether or not
to calculate the mean read depth for each individual
from the specified VCF file. Default is |
outPath |
The file path prepended to all output objects. |
Value
A genotype matrix of 0s, 1s, and 2s denoting
the number of the counted allele in each individual
at each locus. Missing data are indicated with NA.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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