SelectIntegrationFeatures: Select integration features

Description Usage Arguments Value

Description

Choose the features to use when integrating multiple datasets. This function ranks features by the number of datasets they appear in, breaking ties by the median rank across datasets. It returns the highest features by this ranking.

Usage

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SelectIntegrationFeatures(object.list, nfeatures = 2000, assay = NULL,
  verbose = TRUE, fvf.nfeatures = 2000, ...)

Arguments

object.list

List of seurat objects

nfeatures

Number of features to return

assay

Name of assay from which to pull the variable features.

verbose

Print messages

fvf.nfeatures

nfeatures for FindVariableFeatures. Used if VariableFeatures have not been set for any object in object.list.

...

Additional parameters to FindVariableFeatures

Value

A vector of selected features


gcday/seurat_fresh documentation built on June 23, 2019, 12:02 a.m.