SelectIntegrationFeatures: Select integration features

In gcday/seurat_fresh: Tools for Single Cell Genomics

Description

Choose the features to use when integrating multiple datasets. This function ranks features by the number of datasets they appear in, breaking ties by the median rank across datasets. It returns the highest features by this ranking.

Usage

SelectIntegrationFeatures(object.list, nfeatures = 2000, assay = NULL,
  verbose = TRUE, fvf.nfeatures = 2000, ...)

Arguments

object.list	List of seurat objects
nfeatures	Number of features to return
assay	Name of assay from which to pull the variable features.
verbose	Print messages
fvf.nfeatures	nfeatures for FindVariableFeatures. Used if VariableFeatures have not been set for any object in object.list.
...	Additional parameters to FindVariableFeatures

Value

A vector of selected features

gcday/seurat_fresh documentation built on June 23, 2019, 12:02 a.m.