BET1947_v339: Data Files From BiT Heart Cohort

Description Format Source

Description

These are four iTRAQ runs used to process samples from heart transplant patients. The datasets belong to the Biomarkers in Transplantation (BiT) initiative and PROOF Centre of Excellence. In all four runs, the raw MS/MS data was processed using ProteinPilot(tm) software v3.0 with the integrated Paragon(tm) Search and ProGroup(tm) algorithms and searching against the International Protein Index (IPI HUMAN v3.39) database.

Format

Each data.frame has columns

N

the local protein group identifier

Accession

the accession number of the protein

Gene_Symbol

the gene symbol

Protein_Name

the protein name

Source

Takhar M, Sasaki M, Hollander Z, Kepplinger D, Smith D, McManus B, McMaster W, Ng R and Cohen Freue G (Under revision). "PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data."


gcohenfr/pgca documentation built on Aug. 28, 2021, 2:57 p.m.