BET1947_v339: Data Files From BiT Heart Cohort
In gcohenfr/pgca: PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
Description
These are four iTRAQ runs used to process samples from heart transplant
patients. The datasets belong to the Biomarkers in Transplantation (BiT)
initiative and PROOF Centre of Excellence.
In all four runs, the raw MS/MS data was processed using ProteinPilot(tm)
software v3.0 with the integrated Paragon(tm) Search and ProGroup(tm)
algorithms and searching against the International Protein Index
(IPI HUMAN v3.39) database.
Format
Each data.frame has columns
- N
the local protein group identifier
- Accession
the accession number of the protein
- Gene_Symbol
the gene symbol
- Protein_Name
the protein name
Source
Takhar M, Sasaki M, Hollander Z, Kepplinger D, Smith D, McManus B, McMaster
W, Ng R and Cohen Freue G (Under revision). "PGCA: An Algorithm to Link
Protein Groups Created from MS/MS Data."
gcohenfr/pgca documentation built on Aug. 28, 2021, 2:57 p.m.
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Description
These are four iTRAQ runs used to process samples from heart transplant patients. The datasets belong to the Biomarkers in Transplantation (BiT) initiative and PROOF Centre of Excellence. In all four runs, the raw MS/MS data was processed using ProteinPilot(tm) software v3.0 with the integrated Paragon(tm) Search and ProGroup(tm) algorithms and searching against the International Protein Index (IPI HUMAN v3.39) database.
Format
Each data.frame has columns
- N
the local protein group identifier
- Accession
the accession number of the protein
- Gene_Symbol
the gene symbol
- Protein_Name
the protein name
Source
Takhar M, Sasaki M, Hollander Z, Kepplinger D, Smith D, McManus B, McMaster W, Ng R and Cohen Freue G (Under revision). "PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data."
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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